PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000618650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 498aa    MW: 56354.8 Da    PI: 7.1293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000618650genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.87.8e-35461881128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........s 80 
                    lp+G++F+Ptd+el+ e+L +kve+k+      ++++   i+   +i +++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        +
  MDP0000618650  46 LPAGVKFDPTDQELI-EHLXAKVEAKDskshplIDEFIPtIEGEdGIXYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggE 139
                    799************.99******9996665443333333666646**********.555666799******************733345555447 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MDP0000618650 140 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188
                    78************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3742207IPR003441NAC domain
PROSITE profilePS5100533.15446207IPR003441NAC domain
PfamPF023654.0E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSKSNLGSIR SSDLIDAKLE EHQMCGSKQC PGCGHKFEGK PDWLGLPAGV KFDPTDQELI  60
EHLXAKVEAK DSKSHPLIDE FIPTIEGEDG IXYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI MATTSRRDSG  240
SGSCSSKEIL PSHXHRDHDQ MAATAVAAVA XAAPISSYSG IDIHQXKSDH FSFGPFRKSF  300
DEVGIGGEAS TARERPETGT CEEIQEHHQR SVAVQRHHHH HHHMGHELVP DHQQQHQHEH  360
QQQQQQQLHH HQQIATATAF HINRPSHPIS TIISPSPLHH TSIILDQDSY SRLXLQNENF  420
QAQQQQQQQH QQQQHHNQQQ HHKMGDRSAS GLEELIMGCT SSSSNIKEES SMPNPQEAEW  480
MKYSSFWPDP DNPDHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-134418813140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981140.0KF198114.1 Malus hupehensis NAC domain protein (NAC16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337617.10.0PREDICTED: uncharacterized protein LOC103400738
TrEMBLM5W1R30.0M5W1R3_PRUPE; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-141NAC domain containing protein 75